Final Presentaion BD

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Transcript of Final Presentaion BD

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Allseq.com,. 'Allseq - Genia'. N.p., 2015. Web. 4 Dec. 2015. http://allseq.com/knowledgebank/emerging-technologies/geniaGeniachip.com,. ‘Management Team’. 2015. Web. 4 Dec. 2015. http://www.geniachip.com/about/management/

Allseq.com,. 'Allseq - Genia'. N.p., 2015. Web. 4 Dec. 2015. http://allseq.com/knowledgebank/emerging-technologies/geniaGeniachip.com,. ‘Beyond 1000’. 2015. Web. 4 Dec. 2015. http://www.geniachip.com/technology/ Kumar, Shiv et al. 'PEG-Labeled Nucleotides And Nanopore Detection For Single Molecule DNA Sequencing By Synthesis'. Sci. Rep. 2 (2012): n. pag. Web

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GenomeWeb,. 'Raindance, U Chicago Sue 10X Genomics For Patent Infringement'. N.p., 2015. Web. 4 Dec. 2015. https://www.genomeweb.com/business-news/raindance-u-chicago-sue-10x-genomics-patent-infringementBio-itworld.com,. '10X Genomics At AGBT - Bio-IT World'. N.p., 2015. Web. 4 Dec. 2015. http://www.bio-itworld.com/2015/2/25/10x-genomics-agbt.html10X Genomics,. '10X Genomics: Hudsonalpha And Macrogen To Provide Services On 10X Genomics’ Gemcode™ Platform'. N.p., 2015. Web. 5 Dec. 2015.

10X Genomics,. '10X Genomics: Technology'. N.p., 2015. Web. 4 Dec. 2015. http://10xgenomics.com/technologyTarbox, Rob. Long Range Applications with Short Read Sequencing Conference Presentation. Festival of Genomics 2015.10X Genomics. Boston. 23 June 2015. Web. 4 Dec 2015.‘GemCode Platform: Changing the Definition of Sequencing’. 10X Genomics, 10X Genomics 2015. Web. 4 Dec. 2015.

Nature Biotechnology 33, 433–435 2015) doi:10.1038/nbt0515-433

Complete Genomics,. 'Executive Team - Complete Genomics'. N.p., 2015. Web. 4 Dec. 2015. http://www.completegenomics.com/about-us/executive-team/Complete Genomics,. 'Revolocity - Faqs'. N.p., 2015. Web. 4 Dec. 2015. http://www.completegenomics.com/revolocity/faqs/Allseq.com,. 'Allseq - Complete Genomics'. N.p., 2015. Web. 4 Dec. 2015. http://allseq.com/knowledgebank/sequencing-platforms/complete-genomics

Complete Genomics,. 'Revolocity - Faqs'. N.p., 2015. Web. 4 Dec. 2015. http://www.completegenomics.com/revolocity/faqs/Allseq.com,. 'Allseq - Complete Genomics'. N.p., 2015. Web. 4 Dec. 2015. http://allseq.com/knowledgebank/sequencing-platforms/complete-genomicsKrol, Aaron. 'With Revolocity, Complete Genomics Eyes New Markets For DNA Sequencing - Bio-IT World'. Bio-itworld.com. N.p., 2015. Web. 4 Dec. 2015. http://www.bio-itworld.com/2015/10/23/revolocity-complete-genomics-eyes-new-markets-dna-sequencing.html

Texrad.com,. 'Texrad | Part Of Feedback Plc, Texrad Research Software Is An Imaging Risk Stratification Tool That Analyses The Texture Of Clinical Diagnostic Images With The Potential To Assess Prognosis, Risk And Treatment Response'. N.p., 2015. Web. 4 Dec. 2015.

Slideshare.net,. 'Texrad - Texture Analysis Of Radiological Images For Cancer Risk Stra…'. N.p., 2015. Web. 4 Dec. 2015.

Slideshare.net,. 'Texrad - Texture Analysis Of Radiological Images For Cancer Risk Stra…'. N.p., 2015. Web. 4 Dec. 2015.

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the Markowetz lab

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10X Genomics,. '10X Genomics: Technology'. N.p., 2015. Web. 4 Dec. 2015. http://10xgenomics.com/technology

10X Genomics,. '10X Genomics: Hudsonalpha And Macrogen To Provide Services On 10X Genomics’ Gemcode™ Platform'. N.p., 2015. Web. 5 Dec. 2015.

Adams, Jerry M and Andres Strasser. "Is Tumor Growth Sustained by Rare Cancer Stem Cells or Dominant Clones?" Cancer Research (2008 ): 4018- 4021. Online.

Allseq.com,. 'Allseq - Complete Genomics'. N.p., 2015. Web. 4 Dec. 2015. http://allseq.com/knowledgebank/sequencing-platforms/complete-genomics

Allseq.com,. 'Allseq - Genia'. N.p., 2015. Web. 4 Dec. 2015. http://allseq.com/knowledgebank/emerging-technologies/genia

Bio-itworld.com,. '10X Genomics At AGBT - Bio-IT World'. N.p., 2015. Web. 4 Dec. 2015. http://www.bio-itworld.com/2015/2/25/10x-genomics-agbt.html

Biospace.com,. 'Historx Inc Announces Issuance Of U S Patent Covering Core AQUAR Technology'. N.p., 2007. Web. 4 Dec. 2015. http://www.biospace.com/News/historx-inc-announces-issuance-of-u-s-patent/56608

Bloomberg.com,. (2011). Novartis to Buy Genoptix for $470 Million in Cash. Retrieved 4 December-2015,from-http://www.bloomberg.com/news/articles/2011-01-24/novartis-agrees-to-acquire-diagnostics-lab-genoptix-for-470-million-cash

Compbio.cs.brown.edu,. (2014). Raphael Lab // Research. Retrieved 4 December 2015, from http://compbio.cs.brown.edu/research/

Complete Genomics,. 'Executive Team - Complete Genomics'. N.p., 2015. Web. 4 Dec. 2015. http://www.completegenomics.com/about-us/executive-team/

Complete Genomics,. 'Revolocity - Faqs'. N.p., 2015. Web. 4 Dec. 2015. http://www.completegenomics.com/revolocity/faqs/

Drmanac, R. et al. 'Human Genome Sequencing Using Unchained Base Reads On Self-Assembling DNA Nanoarrays'. Science 327.5961 (2009): 78-81. Web.

‘GemCode Platform: Changing the Definition of Sequencing’. 10X Genomics, 10X Genomics 2015. Web. 4 Dec. 2015.

Geniachip.com,. ‘Beyond 1000’. 2015. Web. 4 Dec. 2015. http://www.geniachip.com/technology/

Geniachip.com,. ‘Management Team’. 2015. Web. 4 Dec. 2015. http://www.geniachip.com/about/management/

Genoptix. 2015. Web. 4 Dec. 2015. https://www.genoptix.com/

GenomeWeb,. 'Raindance, U Chicago Sue 10X Genomics For Patent Infringement'. N.p., 2015. Web. 4 Dec. 2015. https://www.genomeweb.com/business-news/raindance-u-chicago-sue-10x-genomics-patent-infringement

Hajirasouliha, I., Mahmoody, A., & Raphael, B. (2014). A combinatorial approach for analyzing intra-tumor heterogeneity from high-throughput sequencing data. Bioinformatics, 30(12), i78-i86. http://dx.doi.org/10.1093/bioinformatics/btu284

HudsonAlpha Institute for Biotechnology,. 'Hudsonalpha And Macrogen To Provide Services On 10X Genomics’ Gemcode™ Platform - Hudsonalpha Institute For Biotechnology'. N.p., 2015. Web. 5 Dec. 2015.

Karow, Julia. "At AGBT, 10xGenomics Launches GemCode Platform; Shipments Slated for Q2 as Firm BAttles IP Lawsuits." GenomeWeb. 2 March 2015. Online.

Krol, Aaron. 'With Revolocity, Complete Genomics Eyes New Markets For DNA Sequencing - Bio-IT World'. Bio-itworld.com. N.p., 2015. Web. 4 Dec. 2015. http://www.bio-itworld.com/2015/10/23/revolocity-complete-genomics-eyes-new-markets-dna-sequencing.html

Kumar, Shiv et al. 'PEG-Labeled Nucleotides And Nanopore Detection For Single Molecule DNA Sequencing By Synthesis'. Sci. Rep. 2 (2012): n. pag. Web

Oesper, L., Mahmoody, A., & Raphael, B. (2013). THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data. Genome Biol, 14(7), R80. http://dx.doi.org/10.1186/gb-2013-14-7-r80

Oesper, L., Satas, G., & Raphael, B. (2014). Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data. Bioinformatics, 30(24), 3532-3540. http://dx.doi.org/10.1093/bioinformatics/btu651

Pollack, Andrew. 'Chinese Company To Acquire DNA Sequencing Firm'. DealBook. N.p., 2012. Web. 4 Dec. 2015. http://dealbook.nytimes.com/2012/09/17/chinese-company-to-acquire-dna-sequencing-firm/?_r=0

Markowetz, F. M. 'Abstract PL05-03: Phylogenetic Quantification Of Intra-Tumor Heterogeneity Predicts Time To Relapse In High-Grade Serous Ovarian Cancer.'. Molecular Cancer Therapeutics12.11_Supplement (2013): PL05-03-PL05-03. Web.

Markowetz, Florian. 'Welcome To The Markowetz Lab'. Markowetz.org. N.p., 2015. Web. 4 Dec. 2015.

Nanostring.com,. 'Digital Genomics For Translational Research And Molecular Diagnostics | Nanostring® Technologies, Inc.'. N.p., 2015. Web. 4 Dec. 2015.

Nicholson, Allen D. et al. 'Automated Quantitative Analysis Of Tissue Microarray Of 443 Patients With Colorectal Adenocarcinoma: Low Expression Of Bcl-2 Predicts Poor Survival'. Journal of the American College of Surgeons 219.5 (2014): 977-987. Web.

Nikolaishvilli-Feinberg, N. et al. 'Development Of DNA Damage Response Signaling Biomarkers Using Automated, Quantitative Image Analysis'. Journal of Histochemistry & Cytochemistry 62.3 (2013): 185-196. Web.

Rieber, Nora et al. 'Coverage Bias And Sensitivity Of Variant Calling For Four Whole-Genome Sequencing Technologies'. PLoS ONE 8.6 (2013): e66621. Web.

Shibata, Darryl. "Mutation and Epigenetic Molecular Clocks in Cancer." Carcinogenesis (2011): 123-128. Print.

Schwarz, Roland F. et al. 'Phylogenetic Quantification Of Intra-Tumour Heterogeneity'. PLoS Comput Biol 10.4 (2014): e1003535. Web.

Slideshare.net,. 'Texrad - Texture Analysis Of Radiological Images For Cancer Risk Stra…'. N.p., 2015. Web. 4 Dec. 2015.

Tarbox, Rob. Long Range Applications with Short Read Sequencing Conference Presentation. Festival of Genomics 2015.10X Genomics. Boston. 23 June 2015. Web. 4 Dec 2015. Texrad.com,. 'Texrad | Part Of Feedback Plc, Texrad Research Software Is An Imaging Risk Stratification Tool That Analyses The Texture Of Clinical Diagnostic Images With The Potential To Assess Prognosis, Risk And Treatment Response'. N.

p., 2015. Web. 4 Dec. 2015.

Updatefrom.com,. 'Historx - Insights - Announcement'. N.p., 2015. Web. 4 Dec. 2015. http://www.updatefrom.com/historx/2012_q4/announcement.asp

Vandervalk, Benjamin P, et al. "Konnector v2.0: Pseudo-long Reads from Paired-end Sequencing Data." BMC Medical Genomics 8 (2015): http://www.biomedcentral.com/1755-8794/8/S3/S1. online. WIRE, BUSINESS. 'Hudsonalpha And Macrogen To Provide Services On 10X Genomics’ Gemcode™ Platform | Business Wire'. Businesswire.com. N.p., 2015. Web. 4 Dec. 2015.